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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16220451_16222845_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16220451 - 16222845
Intron Length:
2395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TCTTCTTGAACA
Flanking Amino Acid:
QRSFMALSQDIQKTIKKTAR
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1.2
83.2
30.8
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
75.6
0.58
1
72.9
36.2
Minor 5ss
36.4
-1.5
2.7
41.6
38.3
Minor BPS
74
0.75
1.3
80.01
36.1

Associated Gene:

Gene:
CAPRIN1
Ensembl Gene ID:
ENSAPLG00000006975
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007313
16202134 - 16234272
32139
ENSAPLT00000034318
16202134 - 16234272
32139
ENSAPLT00000019087
16202134 - 16234272
32139