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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16222933_16224240_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16222933 - 16224240
Intron Length:
1308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAAGAA
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTTCAAG
Flanking Amino Acid:
KGERLNQDQLDAVSKYQEVT
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
66.4
32.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
84
0.76
0.9
83.6
31.9
Minor 5ss
29.2
-2.4
3.4
34.6
43.7
Minor BPS
60.5
0.18
2
72.05
40.8

Associated Gene:

Gene:
CAPRIN1
Ensembl Gene ID:
ENSAPLG00000006975
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034318
16202134 - 16234272
32139
ENSAPLT00000019087
16202134 - 16234272
32139
ENSAPLT00000007313
16202134 - 16234272
32139