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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16280658_16283968_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16280658 - 16283968
Intron Length:
3311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
TTCATTCACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCATTCACT
Flanking Amino Acid:
AIERKSLDPSEEPVDEVLQI
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.1
65
40.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
75.1
0.56
0.9
73.7
35.8
Minor 5ss
34.3
-1.8
3.2
40.1
40
Minor BPS
63.7
0.51
2.1
84.99
41.5

Associated Gene:

Gene:
LMO2
Ensembl Gene ID:
ENSAPLG00000006962
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007213
16280077 - 16287505
7429