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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16284185_16286648_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16284185 - 16286648
Intron Length:
2464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACAGT
5'SS Class:
major
3'SS Sequence:
GTTGTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
CTCTGCTTACTT
Flanking Amino Acid:
GRKLCRRDYLRLFGQDGLCA
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
67.7
43.2
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
76
0.58
0.9
73.5
41.9
Minor 5ss
46.5
-0.4
2.8
66.5
44.6
Minor BPS
51.5
0.13
2.1
70.75
46.9

Associated Gene:

Gene:
LMO2
Ensembl Gene ID:
ENSAPLG00000006962
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007213
16280077 - 16287505
7429