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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16300987_16304381_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16300987 - 16304381
Intron Length:
3395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGGGTA
5'SS Class:
major
3'SS Sequence:
TTTATATTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCAAACTTAATG
Flanking Amino Acid:
LSFLDYRDLMSCCYLSRRLN
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
69.4
37.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.6
0.73
0.8
77.4
35.8
Minor 5ss
26.3
-2.7
3.7
37.2
47.4
Minor BPS
56.3
0.06
1.6
58.08
43.4

Associated Gene:

Gene:
FBXO3
Ensembl Gene ID:
ENSAPLG00000006774
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007049
16300880 - 16321914
21035