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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16304472_16306816_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16304472 - 16306816
Intron Length:
2345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
CATGTCTACTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGGTGTTTAACC
Flanking Amino Acid:
RHCKKYWLISDAEKSQRNQS
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
69.9
41.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
64.8
0.33
0.9
62.7
38.4
Minor 5ss
37.6
-1.4
3.3
45.7
43.5
Minor BPS
63
0.39
1.8
70.61
41.1

Associated Gene:

Gene:
FBXO3
Ensembl Gene ID:
ENSAPLG00000006774
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007049
16300880 - 16321914
21035