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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16315490_16317725_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16315490 - 16317725
Intron Length:
2236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGACACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
TCTTCTTTGACA
Flanking Amino Acid:
NPSAIDMFITGTSYLEWFTS
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1.1
81.6
33.2
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
64
0.32
0.9
55.7
39.4
Minor 5ss
49.4
-0
2.9
73.9
42.6
Minor BPS
79.5
0.92
1
81.99
33.2

Associated Gene:

Gene:
FBXO3
Ensembl Gene ID:
ENSAPLG00000006774
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007049
16300880 - 16321914
21035