About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16319911_16321681_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16319911 - 16321681
Intron Length:
1771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATTAAAT
Flanking Amino Acid:
PTFKVSTARMETNHNEYAVD
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
74.3
0.55
1
74.6
40
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
61.5
0.44
2.1
86.72
38.6

Associated Gene:

Gene:
FBXO3
Ensembl Gene ID:
ENSAPLG00000006774
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007049
16300880 - 16321914
21035