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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16326842_16327342_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
16326842 - 16327342
Intron Length:
501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGTGTAAT
5'SS Class:
major
3'SS Sequence:
GCCTCCAAACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AACGTTTTAAAT
Flanking Amino Acid:
MGGTMIKMNCI
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
0.9
77.5
31.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
52.7
0.06
1
45.2
35.4
Minor 5ss
38.2
-1.3
2.7
47.2
42.9
Minor BPS
52.6
0.16
1.5
63.82
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025499
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044605
16326210 - 16331875
5666