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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16327416_16328126_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16327416 - 16328126
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATTCAGTAAAG
Flanking Amino Acid:
CIILVAFCSSGYALRCYHCE
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.8
24.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
78.3
0.64
0.8
77
31.7
Minor 5ss
30.6
-2.2
2.5
34.4
41.2
Minor BPS
48.1
-0.2
2.4
63.42
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025499
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044605
16326210 - 16331875
5666