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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16335759_16339257_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16335759 - 16339257
Intron Length:
3499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTTTTTTCATA
Flanking Amino Acid:
RPGPARPPPGSYLETMWKWG
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
83.6
0.76
0.7
80.1
32
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
58.8
0.27
1.7
70.9
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020680
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017780
16335382 - 16370128
34747