Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16339313_16340461_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16339313 - 16340461

Intron Length:

1149

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

TTAATGTCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCAAAA

U12 Branch Point Sequence:

ATATGCTTAATG

Flanking Amino Acid:

GSGDDSPSKAAAGSQDAGNV

Intron Amino Acid Position:

145

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

1.1

77.8

36.6

Major BPS

68.1

0.45

73.5

28.6

Major PPT

76.3

0.59

69.9

41.1

Minor 5ss

41.3

-1

2.8

62.9

Minor BPS

62.9

0.27

1.8

66.59

41.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020680

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017780

16335382 - 16370128

34747