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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16340606_16341107_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16340606 - 16341107
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGTGT
5'SS Class:
major
3'SS Sequence:
CTAATGTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
CCCTTCATGACT
Flanking Amino Acid:
ELRNKDNQLKEERESADAKL
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
61.5
45.6
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
71.5
0.48
0.9
65.5
40.7
Minor 5ss
42.9
-0.8
3.5
65.1
46.1
Minor BPS
53
0.18
1.7
67
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020680
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017780
16335382 - 16370128
34747