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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16341255_16342354_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16341255 - 16342354
Intron Length:
1100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATGGAAT
Flanking Amino Acid:
GLEEKAEQKKASRDGDQENA
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97
1.11
0.7
88.7
23.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.9
0.79
0.8
79.6
32.3
Minor 5ss
37.2
-1.4
3.3
52
45.2
Minor BPS
48.1
-0
1.9
70.93
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020680
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017780
16335382 - 16370128
34747