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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16345763_16347447_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16345763 - 16347447
Intron Length:
1685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATTTTTTTAATA
Flanking Amino Acid:
ELDAKDQQLKEINENLKRLQ
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
83.5
27.6
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
80.5
0.69
0.9
78.1
34.4
Minor 5ss
36.9
-1.5
3.1
49.9
40.5
Minor BPS
77.8
0.87
1
80.84
27.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020680
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017780
16335382 - 16370128
34747