Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16347764_16348165_F

Intron Information:

Intron Rank:

Intron Class:

minor-like

Intron Phase:

Intron Coordinates:

16347764 - 16348165

Intron Length:

402

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATCCTAT

5'SS Class:

weak_minor

3'SS Sequence:

TCTTGTTCCTTAG|T

3'SS Class:

minor_hybrid

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

TTTAAAATATTT

Flanking Amino Acid:

TTKEKMEELEVQLKLKTEEA

Intron Amino Acid Position:

585

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.6

0.46

1.2

67.6

40.3

Major BPS

88.7

0.96

0.8

36.5

Major PPT

78.2

0.63

0.8

77.2

31.6

Minor 5ss

0.84

1.8

81.8

38.5

Minor BPS

42.9

-0.4

2.1

68.32

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020680

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017780

16335382 - 16370128

34747