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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16348276_16348646_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16348276 - 16348646
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGTGTATA
5'SS Class:
major
3'SS Sequence:
CTTTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
ATTTGAAAAACT
Flanking Amino Acid:
IKQLEDELKNFSSKNNDVSA
Intron Amino Acid Position:
622

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
77.9
31.2
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
89.4
0.89
0.6
88.9
20.3
Minor 5ss
42.4
-0.8
2.7
54.9
42.7
Minor BPS
44.3
-0.3
2.4
72.6
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020680
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017780
16335382 - 16370128
34747