About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16348765_16349573_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16348765 - 16349573
Intron Length:
809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAAACA
5'SS Class:
major
3'SS Sequence:
TATACTTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTATTATACTT
Flanking Amino Acid:
QSLHEIRTQNEELLTKLEVY
Intron Amino Acid Position:
661

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
69.4
34.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
75.8
0.58
0.8
70.5
35.7
Minor 5ss
33.3
-1.9
3
38.3
40.6
Minor BPS
48.6
-0
1.8
72.63
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020680
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017780
16335382 - 16370128
34747