Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16359125_16359430_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16359125 - 16359430

Intron Length:

306

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTCAT

5'SS Class:

strong_major

3'SS Sequence:

TCTTAATATTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

CTTTTCTTAATA

Flanking Amino Acid:

TEKVATLKEKTLKQDGMVES

Intron Amino Acid Position:

982

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

1.1

77.9

38.6

Major BPS

0.92

0.9

86.2

29.1

Major PPT

0.52

0.9

71.1

38.7

Minor 5ss

41.4

-1

58.6

45.9

Minor BPS

80.6

0.96

1.1

82.43

32.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020680

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017780

16335382 - 16370128

34747