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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16387601_16391879_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16387601 - 16391879
Intron Length:
4279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCTGAGCA
Flanking Amino Acid:
IITNWDDMEKIWHHSFYNEL
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
81.3
32.8
Major BPS
100
1.24
0.5
100
0
Major PPT
85
0.79
0.8
82.2
34.1
Minor 5ss
31.8
-2.1
3.6
48.2
47.9
Minor BPS
65.8
0.49
1.7
80.11
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006513
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006748
16385720 - 16399248
13529