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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16391991_16394303_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16391991 - 16394303
Intron Length:
2313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTAATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AAATCTTTAATT
Flanking Amino Acid:
PKANREKMTQIMFETFNVPA
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
73.2
36.2
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
83.7
0.76
0.8
77.6
34.4
Minor 5ss
33.8
-1.8
3.7
49.8
46.8
Minor BPS
75.3
0.87
1.1
80.52
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006513
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006748
16385720 - 16399248
13529