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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16394389_16395534_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16394389 - 16395534
Intron Length:
1146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TGAAAAATAACC
Flanking Amino Acid:
LSLYASGRTTGIVLDSGDGV
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
61.3
0.28
1
62
30.6
Major PPT
93.6
0.98
0.6
92.4
17.8
Minor 5ss
33.5
-1.9
3
41.5
39.2
Minor BPS
44.4
-0.4
2
57.02
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006513
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006748
16385720 - 16399248
13529