Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16395697_16396206_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16395697 - 16396206

Intron Length:

510

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAATAAGC

5'SS Class:

major

3'SS Sequence:

TGGCTGTCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAAAAA

U12 Branch Point Sequence:

TGTTGCTTAAAA

Flanking Amino Acid:

TERGYSFVTTAEREIVRDVK

Intron Amino Acid Position:

206

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.7

0.54

64.5

39.8

Major BPS

61.4

0.28

1.1

67.9

34.4

Major PPT

72.5

0.51

65.5

Minor 5ss

-1.8

2.9

Minor BPS

66.3

0.51

1.9

77.66

38.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006513

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006748

16385720 - 16399248

13529