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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16397719_16399104_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16397719 - 16399104
Intron Length:
1386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTGTTTACAACA
Flanking Amino Acid:
ALAPSTMKIKMIAPPERKYS
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
81
0.7
0.8
73.5
36.4
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
51.3
0.04
1.8
67.88
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006513
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006748
16385720 - 16399248
13529