About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16473343_16483248_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16473343 - 16483248
Intron Length:
9906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGGGAT
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTCCTTTATCA
Flanking Amino Acid:
RIIIPDLQQTKCIRFNPEAS
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
67.1
38.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
33.1
-1.9
3.7
51.9
46
Minor BPS
70.1
0.63
1.5
80.75
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027417
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028387
16473139 - 16484952
11814