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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16483370_16484911_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16483370 - 16484911
Intron Length:
1542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGAGATG
5'SS Class:
major
3'SS Sequence:
TGTTTCCTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATATTTTAAATT
Flanking Amino Acid:
NYGLFQPASNVSIQEKSIQT
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64
0.33
1.1
59.4
44.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.5
0.75
0.8
81.3
30.7
Minor 5ss
34
-1.8
3.6
44.1
45.8
Minor BPS
59.3
0.37
1.6
74.15
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027417
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028387
16473139 - 16484952
11814