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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16556433_16559888_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16556433 - 16559888
Intron Length:
3456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTACACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCTTTCTCTACA
Flanking Amino Acid:
SLLNAFTKKEVPFREAPTYS
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
32.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
80.8
0.69
0.8
76.7
30.9
Minor 5ss
38
-1.4
3.4
55
49.2
Minor BPS
56.8
0.21
1.9
71.02
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006385
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006618
16556396 - 16777690
221295