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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16563056_16564802_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
16563056 - 16564802
Intron Length:
1747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGCAGAGG
5'SS Class:
weak_major
3'SS Sequence:
TTTACGGTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GTAATTTCAATT
Flanking Amino Acid:
AKRQQHSPGLGANKDPLSAL
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.5
0.13
1.1
44.8
44.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
66.7
0.38
1
58
43
Minor 5ss
24.1
-3
3.1
21.6
37.4
Minor BPS
51
0.11
1.5
66.19
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006385
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006618
16556396 - 16777690
221295