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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16624452_16643156_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16624452 - 16643156
Intron Length:
18705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATTCTCTCTACA
Flanking Amino Acid:
VGSYDSFDASSDCIIEEKAV
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
80
0.75
1
78.6
31
Major PPT
83.5
0.75
0.8
77.2
30.9
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
50.6
0.01
1.9
67.28
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006385
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006618
16556396 - 16777690
221295