Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16643240_16644840_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16643240 - 16644840

Intron Length:

1601

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TTTATTTTTAAAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTATTTTTAAAG

Flanking Amino Acid:

GFGFVLRGAKADTPIEEFTP

Intron Amino Acid Position:

259

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.4

0.91

0.8

80.6

31.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

80.8

0.69

82.3

33.1

Minor 5ss

41.4

-1

3.1

45.7

Minor BPS

66.8

0.39

1.4

68.96

38.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006385

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006618

16556396 - 16777690

221295