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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16740520_16760978_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
16740520 - 16760978
Intron Length:
20459

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAT|GCTGGGATA
5'SS Class:
weak_major
3'SS Sequence:
TATTACAGATAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTACTGAATA
Flanking Amino Acid:
LGKKVFFDKHVDEIVPVSKP
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59
0.21
1.4
65.2
38.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
51.2
0.03
1.2
55.5
43.2
Minor 5ss
22.9
-3.1
4.1
36
41.1
Minor BPS
69.6
0.61
1.6
81.62
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006385
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006618
16556396 - 16777690
221295