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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16800940_16801033_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16800940 - 16801033
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTTAA
5'SS Class:
major
3'SS Sequence:
ATTGTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CCCTCTCTGATT
Flanking Amino Acid:
QKAPSSPVYEDAASYDAESA
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
74
32.1
Major BPS
77.5
0.68
1
79.6
33
Major PPT
83.4
0.75
0.8
77.8
36
Minor 5ss
42
-0.9
2.5
49.8
46.5
Minor BPS
49.2
0.02
1.7
62.62
42.6

Associated Gene:

Gene:
CTTN
Ensembl Gene ID:
ENSAPLG00000005914
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006208
16798970 - 16818290
19321