Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16805421_16806522_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16805421 - 16806522

Intron Length:

1102

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTTAC

5'SS Class:

strong_major

3'SS Sequence:

TCCTTGCGGGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

GTTTTGTTAATG

Flanking Amino Acid:

YGVQKDRMDKNAATFEDIEK

Intron Amino Acid Position:

282

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.6

1.1

0.7

87.5

21.2

Major BPS

84.4

0.85

34.5

Major PPT

0.23

1.1

57.5

38.6

Minor 5ss

40.5

-1.1

2.8

45.2

Minor BPS

58.2

0.12

2.1

67.31

Associated Gene:

Gene:

CTTN

Ensembl Gene ID:

ENSAPLG00000005914

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006208

16798970 - 16818290

19321