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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16812098_16812814_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16812098 - 16812814
Intron Length:
717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTCACATGAATT
Flanking Amino Acid:
FGVQTDRVDQSAVGFEYQGK
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.3
0.75
0.8
74.6
35.6
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
49.7
0.06
1.8
67.95
42.5

Associated Gene:

Gene:
CTTN
Ensembl Gene ID:
ENSAPLG00000005914
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006208
16798970 - 16818290
19321