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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16816299_16817694_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16816299 - 16817694
Intron Length:
1396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAAGCAG
5'SS Class:
major
3'SS Sequence:
TCTGTCTTTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TGCTGTTTAATT
Flanking Amino Acid:
VKGSGHQEHINIHQLRENVF
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.1
56.6
42.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
74.2
0.54
1
74.3
34.3
Minor 5ss
31.2
-2.2
3.4
38.1
41.3
Minor BPS
62.1
0.46
1.8
75.88
41.7

Associated Gene:

Gene:
CTTN
Ensembl Gene ID:
ENSAPLG00000005914
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006208
16798970 - 16818290
19321