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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16835628_16835740_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16835628 - 16835740
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTTCCCAGATCT
Flanking Amino Acid:
DGPTVVVWLELWVGMPAWYV
Intron Amino Acid Position:
894

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
86.8
0.83
0.9
84.6
36
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
51.5
0.12
2
80.01
41.1

Associated Gene:

Gene:
PPFIA1
Ensembl Gene ID:
ENSAPLG00000005058
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005321
16825714 - 16879387
53674