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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16835823_16841095_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16835823 - 16841095
Intron Length:
5273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTATTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTGTTATTAATA
Flanking Amino Acid:
QAEKNRKMQKKHELLEEARR
Intron Amino Acid Position:
866

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
82.6
0.73
0.8
78.4
34.8
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
67.5
0.55
1.5
75.87
35.6

Associated Gene:

Gene:
PPFIA1
Ensembl Gene ID:
ENSAPLG00000005058
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005321
16825714 - 16879387
53674