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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16841190_16844430_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16841190 - 16844430
Intron Length:
3241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTTTG
5'SS Class:
major
3'SS Sequence:
TTGTTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGAGAT
U12 Branch Point Sequence:
ATGATAGTAAGT
Flanking Amino Acid:
GQTNKETLGQVGMAEADSSS
Intron Amino Acid Position:
835

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.2
70.9
41.9
Major BPS
64
0.35
1.3
60.7
45.9
Major PPT
92
0.94
0.7
88.3
28.9
Minor 5ss
38.8
-1.3
3
49.5
46.8
Minor BPS
40.8
-0.6
2.3
59.49
43.9

Associated Gene:

Gene:
PPFIA1
Ensembl Gene ID:
ENSAPLG00000005058
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005321
16825714 - 16879387
53674