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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16845351_16848196_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16845351 - 16848196
Intron Length:
2846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCCATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTCCATT
Flanking Amino Acid:
EVDRLGIMTLSPASREEVRD
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
87
27.7
Major BPS
100
1.24
0.5
100
0
Major PPT
75.5
0.57
0.9
75.7
34.2
Minor 5ss
40.4
-1.1
2.8
51.7
39.2
Minor BPS
48.5
-0
1.9
70.83
41.3

Associated Gene:

Gene:
PPFIA1
Ensembl Gene ID:
ENSAPLG00000005058
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005321
16825714 - 16879387
53674