Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16849873_16850109_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

16849873 - 16850109

Intron Length:

237

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTACCAGAA

5'SS Class:

major

3'SS Sequence:

CCTAAGGATAAAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCCTAA

U12 Branch Point Sequence:

TTCCCCACACCT

Flanking Amino Acid:

VRLRATSLHHSVSLCFSRPD

Intron Amino Acid Position:

524

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.1

0.43

1.2

62.4

38.4

Major BPS

59.6

0.24

1.3

58.7

39.9

Major PPT

48.7

-0

1.2

40.4

Minor 5ss

34.2

-1.8

3.6

48.4

Minor BPS

46.9

-0.1

2.1

70.85

45.5

Associated Gene:

Gene:

PPFIA1

Ensembl Gene ID:

ENSAPLG00000005058

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005321

16825714 - 16879387

53674