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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16850190_16851427_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16850190 - 16851427
Intron Length:
1238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
KQIEELQHEKDQLVINVEAL
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
85.9
29.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
92.4
0.95
0.7
87.7
29.7
Minor 5ss
47.1
-0.3
2.7
68.3
42.6
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
PPFIA1
Ensembl Gene ID:
ENSAPLG00000005058
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005321
16825714 - 16879387
53674