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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16853819_16854398_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16853819 - 16854398
Intron Length:
580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAGTAC
5'SS Class:
major
3'SS Sequence:
TTATATATCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTTGTTATAT
Flanking Amino Acid:
LEEKNQELQRARQREKMNEE
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
63.3
37.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
72.7
0.51
0.9
71
39.1
Minor 5ss
35.9
-1.6
3.3
40.9
45.9
Minor BPS
51.2
0.12
2.3
80.55
41.4

Associated Gene:

Gene:
PPFIA1
Ensembl Gene ID:
ENSAPLG00000005058
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005321
16825714 - 16879387
53674