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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16854483_16855478_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16854483 - 16855478
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTTAAATTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTTAAAT
Flanking Amino Acid:
LAQRVAALSKAEERHGNIEE
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
73
33.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.8
0.47
1.1
65.7
44.2
Minor 5ss
25.8
-2.8
2.9
29.5
43.2
Minor BPS
72.8
0.79
1.3
84.4
36.4

Associated Gene:

Gene:
PPFIA1
Ensembl Gene ID:
ENSAPLG00000005058
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005321
16825714 - 16879387
53674