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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16856531_16857246_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16856531 - 16857246
Intron Length:
716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTGTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATATTAATAACT
Flanking Amino Acid:
NTKLQRDVRETMAQKEDMEE
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.7
92.2
16.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
73.3
0.52
1
69.5
41.6
Minor 5ss
32
-2.1
2.8
41.5
45.1
Minor BPS
55.9
0.26
1.9
77.59
37.9

Associated Gene:

Gene:
PPFIA1
Ensembl Gene ID:
ENSAPLG00000005058
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005321
16825714 - 16879387
53674