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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16857813_16858235_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16857813 - 16858235
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAC
U12 Branch Point Sequence:
TTGACTAGAAAC
Flanking Amino Acid:
EEELGTTHKELMILKEQNNQ
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82.3
32.2
Major BPS
69.9
0.49
0.9
61.1
36.4
Major PPT
89.3
0.88
0.6
88.7
20.6
Minor 5ss
43.4
-0.7
3.1
60.6
44.5
Minor BPS
45.9
-0.3
1.8
58.52
39.8

Associated Gene:

Gene:
PPFIA1
Ensembl Gene ID:
ENSAPLG00000005058
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005321
16825714 - 16879387
53674