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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16859361_16860014_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16859361 - 16860014
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
TGTTCCGAACAG
Flanking Amino Acid:
ELKAERNNTRLLLEHLECLV
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
75.8
35
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
89
0.88
0.7
88.9
28.2
Minor 5ss
41
-1
2.7
45.9
42.3
Minor BPS
40.9
-0.8
2.5
52.97
47.4

Associated Gene:

Gene:
PPFIA1
Ensembl Gene ID:
ENSAPLG00000005058
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005321
16825714 - 16879387
53674