Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16917220_16918215_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16917220 - 16918215

Intron Length:

996

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTTAT

5'SS Class:

strong_major

3'SS Sequence:

ATTTACTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAC

U12 Branch Point Sequence:

TTTCTCACAATT

Flanking Amino Acid:

ARLAFVIVFQNLVMFMSDFV

Intron Amino Acid Position:

918

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.9

0.94

0.8

85.7

25.6

Major BPS

0.87

0.8

85.6

Major PPT

0.79

0.8

81.8

34.9

Minor 5ss

-0.2

2.5

66.4

45.1

Minor BPS

54.4

0.22

1.8

78.58

37.5

Associated Gene:

Gene:

ANO1

Ensembl Gene ID:

ENSAPLG00000004437

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026662

16916959 - 16944294

27336

ENSAPLT00000004623

16916959 - 16962380

45422