About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16922782_16924101_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16922782 - 16924101
Intron Length:
1320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTGAG
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGAAAT
U12 Branch Point Sequence:
ATCCATTGAAAT
Flanking Amino Acid:
AGLTPEYMEMIIQFGFVTLF
Intron Amino Acid Position:
752

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1
62.1
38.7
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
92.7
0.96
0.6
92.4
17.8
Minor 5ss
27.9
-2.5
3
27.6
37.5
Minor BPS
47
-0.1
1.7
63.31
40.3

Associated Gene:

Gene:
ANO1
Ensembl Gene ID:
ENSAPLG00000004437
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028657
16920139 - 16957900
37762
ENSAPLT00000026662
16916959 - 16944294
27336
ENSAPLT00000004623
16916959 - 16962380
45422