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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16926714_16927581_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16926714 - 16927581
Intron Length:
868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTACTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
CTGCTCTTACTT
Flanking Amino Acid:
LTNFVGIIFMVGLTFAIVFG
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
36.8
Major BPS
79
0.72
1
69
38.9
Major PPT
83
0.74
0.8
77.1
30.4
Minor 5ss
44.1
-0.6
2.9
58
40.8
Minor BPS
54.1
0.21
1.7
68.18
43.5

Associated Gene:

Gene:
ANO1
Ensembl Gene ID:
ENSAPLG00000004437
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004623
16916959 - 16962380
45422
ENSAPLT00000028657
16920139 - 16957900
37762
ENSAPLT00000026662
16916959 - 16944294
27336