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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16927657_16930640_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
16927657 - 16930640
Intron Length:
2984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
CAAAAAAATTTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
TTTTCCCCAAAA
Flanking Amino Acid:
SLRKEHKHKETDKEKLTWKD
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
49.1
-0
1
42.1
41.6
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
58.9
0.28
2
78.36
37.5

Associated Gene:

Gene:
ANO1
Ensembl Gene ID:
ENSAPLG00000004437
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026662
16916959 - 16944294
27336